Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-12-24 13:04:58,045 [623] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-12-24 13:04:58,174 [623] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-12-24 13:04:58,179 [623] INFO pulse.unloader: ------------------------------------------------------------------------
2023-12-24 13:04:58,179 [623] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-12-24 13:04:58,180 [623] INFO pulse.unloader: ------------------------------------------------------------------------
2023-12-24 13:04:58,212 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:58,212 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:58,213 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:58,213 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:58,382 [623] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-12-24 13:04:59,201 [623] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-12-24 13:04:59,218 [623] INFO pulse.unloader:
Do an intial solve
2023-12-24 13:04:59,305 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:59,306 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:59,306 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:59,307 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:59,307 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:04:59,805 [623] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-12-24 13:04:59,879 [623] DEBUG UFL_LEGACY: Blocks of each mode:
2023-12-24 13:05:00,084 [623] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-12-24 13:05:38,519 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:38,520 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:38,520 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:38,521 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:38,522 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:38,695 [623] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-12-24 13:05:38,769 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-24 13:05:38,958 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-24 13:05:42,388 [623] INFO pulse.unloader:
Iteration: 0
2023-12-24 13:05:45,950 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-24 13:05:45,992 [623] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-24 13:05:50,183 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,188 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-24 13:05:50,232 [623] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-12-24 13:05:50,627 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,675 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,676 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,717 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,718 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:05:50,756 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-12-24 13:05:50,907 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:50,908 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:50,909 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:50,909 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:50,909 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:05:51,199 [623] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-12-24 13:05:51,271 [623] DEBUG UFL_LEGACY: Blocks of each mode:
2023-12-24 13:05:51,476 [623] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-12-24 13:06:29,909 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:06:29,910 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:06:29,910 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:06:29,911 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:06:29,911 [623] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-12-24 13:06:30,048 [623] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-12-24 13:06:30,122 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-24 13:06:30,309 [623] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-12-24 13:06:33,748 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-12-24 13:06:33,921 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:33,922 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:33,964 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:33,965 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,005 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,006 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,044 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-12-24 13:06:34,055 [623] INFO pulse.unloader:
Residual: 0.011328623428538017
2023-12-24 13:06:34,056 [623] INFO pulse.unloader:
Iteration: 1
2023-12-24 13:06:34,228 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,229 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,271 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,272 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,313 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,314 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:34,350 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-12-24 13:06:37,323 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-12-24 13:06:37,496 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,498 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,539 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,540 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,582 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,583 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,620 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-12-24 13:06:37,631 [623] INFO pulse.unloader:
Residual: 0.001698010214540199
2023-12-24 13:06:37,631 [623] INFO pulse.unloader:
Iteration: 2
2023-12-24 13:06:37,804 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,805 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,845 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,846 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,886 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,887 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:37,924 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-12-24 13:06:40,911 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-12-24 13:06:41,090 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,092 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,134 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,135 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,176 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,177 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,215 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-12-24 13:06:41,226 [623] INFO pulse.unloader:
Residual: 0.0002592876931300245
2023-12-24 13:06:41,227 [623] INFO pulse.unloader:
Iteration: 3
2023-12-24 13:06:41,400 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,401 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,443 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,444 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,484 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,485 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:41,522 [623] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-12-24 13:06:44,501 [623] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-12-24 13:06:44,674 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,675 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,717 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,718 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,759 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,760 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,798 [623] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-12-24 13:06:44,810 [623] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2023-12-24 13:06:44,810 [623] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-12-24 13:06:44,988 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:44,988 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:45,029 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:45,030 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:45,070 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-12-24 13:06:45,071 [623] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()